Search results for "singlet [baryon]"

showing 10 items of 63 documents

Photosensitization of DNA by β-carbolines: Kinetic analysis and photoproduct characterization

2012

β-Carbolines (βCs) are a group of alkaloids present in many plants and animals. It has been suggested that these alkaloids participate in a variety of significant photosensitized processes. Despite their well-established natural occurrence, the main biological role of these alkaloids and the mechanisms involved are, to date, poorly understood. In the present work, we examined the capability of three important βCs (norharmane, harmane and harmine) and two of its derivatives (N-methyl-norharmane and N-methyl-harmane) to induce DNA damage upon UV-A excitation, correlating the type and extent of the damage with the photophysical characteristics and DNA binding properties of the compounds. The r…

chemistry.chemical_classificationReactive oxygen speciesPhotosensitizing AgentsMolecular StructurebiologySuperoxideSinglet oxygenDNA damageStereochemistryOrganic ChemistryPyrimidine dimerDNAPhotochemical ProcessesBiochemistrySuperoxide dismutaseKineticschemistry.chemical_compoundHarminechemistrybiology.proteinPhysical and Theoretical ChemistryHarmaneReactive Oxygen SpeciesCarbolinesThymidineOrganic & Biomolecular Chemistry
researchProduct

Watching the photo-oxidation of a single aromatic hydrocarbon molecule

2001

International audience; The photooxidation of single dye molecules (see scheme) can be followed by confocal fluorescence microscopy. The self-sensitized reaction with singlet oxygen leads to a suite of products, which may be differentiated spectrally. Tentative structures for certain photoproducts have been obtained from quantum-chemical calculations.

chemistry.chemical_classificationSingle-molecule spectroscopyphotochemistryChemistrySinglet oxygenConfocalGeneral ChemistryPhotochemistryCatalysisFluorescence spectroscopySingle Molecule Spectroscopychemistry.chemical_compoundbiological sciencesFluorescence microscopeMolecule[CHIM]Chemical SciencesPhysics::Chemical PhysicsAromatic hydrocarbonFluorescence spectroscopy
researchProduct

A new experimental protocol for intrazeolite photooxidations. The first product-based estimate of an upper limit for the intrazeolite singlet oxygen …

2002

The intrazeolite photooxidations of several alkenes have been examined in hexane and in perfluorohexane slurries. The ability of perfluorohexane to increase the affinity of alkenes for the interior of the zeolite was documented. The nearly identical reaction rates in the two slurry solvents are attributed to a leveling of the singlet oxygen lifetime by the zeolite framework. A consideration of the rates of the various intrazeolite processes was used to estimate an upper limit for the intrazeolite lifetime of singlet oxygen.

chemistry.chemical_classificationSinglet oxygenGeneral ChemistryPhotochemistryBiochemistryCatalysisCatalysisHexaneReaction ratechemistry.chemical_compoundColloid and Surface ChemistryReaction rate constantHydrocarbonchemistryOrganic chemistryZeolitePerfluorohexaneJournal of the American Chemical Society
researchProduct

Oxidative DNA Damage Profiles in Mammalian Cells

1997

Reactive oxygen species (ROS) are formed inside cells not only under the influence of exogenous agents (visible light, ionizing radiation, and many oxidants such as peroxides or quinones), but also under normal (physiological) conditions as byproducts of oxygen metabolism and other cellular redox reactions (Pryor 1986; Halliwell and Gutteridge 1986; Sies 1986; Clayson et al. 1994). ROS such as hydroxyl radicals and singlet oxygen are a serious threat to the integrity of the cellular genome, since they efficiently react with DNA to generate many types of DNA modifications, at least some of which are pre- mutagenic (Breimer 1990; Halliwell and Aruoma 1991; Epe 1991; Feig et al. 1994). Steady-…

chemistry.chemical_classificationchemistry.chemical_compoundReactive oxygen specieschemistryBiochemistryDNA repairSinglet oxygenRadicalAcridine orangeOxidative phosphorylationGenomeDNA
researchProduct

Advances in singlet oxygen chemistry

2005

The authors discuss the advances made in both mechanistic and synthetic aspects of singlet oxygen chem.  Formation and reactions of singlet oxygen in heterogeneous media (such as zeolites, micelles, vesicles, etc.) are discussed.  Cycloaddns. of mol. oxygen to olefins, heteroatom oxidns. via reaction of singlet oxygen with the electron pair at heteroatoms, and photooxygenations of heterocyclic systems by singlet oxygen are also reviewed.

chemistry.chemical_compoundChemistrySinglet oxygenphotooxygenationOrganic ChemistryDrug Discoveryheteroatom oxidationPhotooxygenationGeneral MedicinePhotochemistryBiochemistrysinglet oxygenTetrahedron
researchProduct

Singlet oxygen generation in PUVA therapy studied using electronic structure calculations

2009

Abstract The ability of furocoumarins to participate in the PUVA (Psoralen + UV-A) therapy against skin disorders and some types of cancer, is analyzed on quantum chemical grounds. The efficiency of the process relies on its capability to populate its lowest triplet excited state, and then either form adducts with thymine which interfere DNA replication or transfer its energy, generating singlet molecular oxygen damaging the cell membrane in photoactivated tissues. By determining the spin–orbit couplings, shown to be the key property, in the intersystem crossing yielding the triplet state of the furocoumarin, the electronic couplings in the triplet–triplet energy transfer process producing …

chemistry.chemical_compoundIntersystem crossingchemistrySinglet oxygenFurocoumarinExcited stateSinglet fissionGeneral Physics and AstronomyElectronic structurePhysical and Theoretical ChemistryTriplet statePhotochemistryThymineChemical Physics
researchProduct

[39] DNA damage induced by ultraviolet and visible light and its wavelength dependence

2000

Publisher Summary DNA damage induced by solar radiation in mammalian cells consists largely of two types of modification: pyrimidine dimers and oxidative modifications. Pyrimidine dimmers that can be subdivided into cyclobutane pyrimidine dimmers, (CPDs) and (6-4) photoproducts are the characteristic and most abundant modifications after direct excitation of DNA, although they can also be formed indirectly by energy transfer from other excited molecules such as carbonyl compounds. Oxidative DNA damage, which includes various pyrimidine and purine modifications, sites of base loss (AP sites), and strand breaks, is generated in only low yield after direct excitation of DNA (except at very sho…

chemistry.chemical_compoundchemistryPyrimidineSinglet oxygenDNA damagemedicinePyrimidine dimerFree radical damage to DNAmedicine.disease_causePhotochemistryDNAUltravioletCyclobutane
researchProduct

Induced Night-Vision by Singlet-Oxygen-Mediated Activation of Rhodopsin

2019

In humans, vision is limited to a small fraction of the whole electromagnetic spectrum. One possible strategy for enhancing vision in deep-red or poor-light conditions consists of recruiting chlorophyll derivatives in the rod photoreceptor cells of the eye, as suggested in the case of some deep-sea fish. Here, we employ all-atom molecular simulations and high-level quantum chemistry calculations to rationalize how chlorin e6 (Ce6), widely used in photodynamic therapy although accompanied by enhanced visual sensitivity, mediates vision in the dark, shining light on a fascinating but largely unknown molecular mechanism. First, we identify persistent interaction sites between Ce6 and the extra…

genetic structuresbiology010405 organic chemistrySinglet oxygenPhotoreceptor proteinRetinal010402 general chemistry01 natural sciencesVisual sensitivityeye diseasesTransmembrane protein0104 chemical scienceschemistry.chemical_compoundchemistryRhodopsinNight visionbiology.proteinBiophysics[CHIM]Chemical SciencesGeneral Materials SciencePhysical and Theoretical ChemistryComputingMilieux_MISCELLANEOUSVisual phototransduction
researchProduct

Effect of gases on biochemical stabilization

2019

International audience; Lipid or protein are sensitive to peroxidation and inert gas limit or stop adulterations. Unsaturated lipids are peroxided by ground state dioxygen in presence of catalysts (iron, enzymes) or after thermal dissociation of C=C bond, and by excited state dioxygen without any assistance (photo-oxidation). Inerting fragile oils by bubbling with dinitrogen or carbon dioxide that are soluble gas in oil slows oxidation process during storage or frying. In a same way, limit the oxidation of the tryptophan residues of protein is possible by reducing oxygen content. Oxidation leads also to oxidation of thiol in disulfide, which induced protein cross-linked and decay of functio…

inorganic chemicalsSinglet oxygenAtmosphereinert gasnitrogen[SDV.AEN] Life Sciences [q-bio]/Food and NutritionaromalipidOxidation[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular Biologyphenol[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyOxygen concentrationproteinProtein oxidation[SDV.AEN]Life Sciences [q-bio]/Food and Nutrition
researchProduct

Purification of Nano-Porous Silicon for Biomedical Applications

2011

Recently, various bio-medical applications of nanoporous silicon (np-Si) have been suggested. This work investigates the biocompatibility of np-Si particles taking into account hazardous residua confined in the pores after preparation. The emphasis is on the potential application of such particles as oxygen photosensitizer for photodynamic therapy of cancer, which requires both negligible toxicity of np-Si particles in darkness and a high photo-cyto-toxic effect due to generation of singlet oxygen under illumination. Considerable amounts of water soluble toxic impurities are found to be present in the nanoporous shell of micrometer-sized np-Si particles immediately after their preparation b…

nano-porous silicon; biomedical applications; toxic impurities; purification; photodynamic therapyMaterials scienceBiocompatibilitySiliconSinglet oxygenNanoporouschemistry.chemical_elementNanotechnologyCondensed Matter PhysicsIsotropic etchingchemistry.chemical_compoundchemistryImpurityGeneral Materials SciencePhotosensitizerWafer
researchProduct